2026 Pfaffenlehner M, […], Binder H, Binder N. A stakeholder-inclusive conceptual framework for modeling routinely collected health data for therapeutic decision-making illustrated by means of multistate models, BMC Med Res Methodology. Jul 2026.
Kelebek HS, Hindel J, […], Valada A, Wijers M, De Martini D. Spotted: Location-informed Reidentification of Hyenas and Leopards in Camera Trap Surveys, arXiv. Jul 2026.
Antony D, […], Cathomen T, Skatulla I, Brunner HG, Arnold SJ, Schmidts M. Base editing-derived models of human WDR34 and WDR60 disease alleles replicate retrograde intraflagellar transport (IFT) and hedgehog signaling defects, Communications Biol. Jul 2026.
Yang H, Karakioulaki M, Purucker L, Litwin T, Has C, Hess M. LLM-Guided ODE Discovery and Parameter Inference from Small-Cohort Aggregate Data, arXiv. Jul 2026.
Butz E, Steinbrenner I, Schultheiss UT, Behning C, Binder H, […], Köttgen A, Sekula P. Systematic Evaluation of Plasma and Urine Metabolites to Predict the Risk of Adverse Kidney-related Outcomes in Chronic Kidney Disease The GCKD Study, Kidney Med. Jul 2026.
Purucker L, […], Hutter F. Beyond IID: How General Are Tabular Foundation Models, Really?, arXiv. Jun 2026.
Heinzel CS. Statistical test to compare the linkage model and the admixture model based on central limit results, Theoretical Population Biology. Jun 2026.
Arnold PG, Jahn J, Bamberg F, Kotter E. Keeping track of things: large language models for patient synopses: Source-bound system for clinical information systems, Die Radiologie. Jun 2026.
Salcan Y, Ging S, Schirrmeister RT, Arnold PG, Kotter E, Bozorgtabar B, Brox T. Scalable Training of Spatially Grounded 2D Vision-Language Models for Radiology, arXiv. Jun 2026.
Bratulić J, Mittal S, Hoffmann DT, Böhm S, Schirrmeister RT, Ball T, Rupprecht C, Brox T. Unlocking In-Context Learning for Natural Datasets Across Modalities, Int J Comput Vision. Jun 2026
Heinzel CS, Pfaffelhuber P, Wakolbinger A. A small noise approximation for Muller’s Ratchet, arXiv. Jun 2026.
Schmachtenberg R, […], Kreutz C, Weber W. Accelerated engineering and genetic programming of wood-based living composite materials, Materials Today. Jun 2026.
Farhadizadeh M, Heinzel CS, Sigle A, Binder H, Wenz F, Hasenauer J, Pfaffelhuber P, Binder N. Typical Healthcare Pathways as a Basis for Admixture Modeling of Patient Trajectories, arXiv. Jun 2026.
Lei L, Kaufmann MM, […], Cathomen T. Genotoxicity profiling reveals distinct platform-and cell type-specific effects in therapeutic gene editing for genetic hyperinflammation, Cell Stem Cell. Jun 2026.
Böhm S, Purucker L, Hutter F, Schlosser P. SurvPFN: Towards Foundation Models for Survival Predictions, In Workshop on Foundation Models Structured Data. Jun 2026.
Tajjar M, Pfefferle A, Purucker L, Hutter F. Towards Pretraining Text Encoders for TabPFN, arXiv. Jun 2026.
Dette H, Heinzel CS, Lange Z, Pfaffelhuber P. Testing for Single-Population Ancestry in the Admixture Model, arXiv. Jun 2026.
Hindel J, Bultmann S, Masnavi H, Cattaneo D, Valada A. Self-Supervised Online Robot-Agnostic Traversability Estimation for Open-World Environments, arXiv. May 2026.
Klawonn A, […], Schmidts M. Deep phenotyping of an ATDC5 in-vitro cartilage model system, Bone Reports. May 2026.
Hasan MA, Biedenkapp A, Awad N. PLASDecoupledCVAE: A Decoupled and Adaptive CVAE Framework for Offline Reinforcement Learning, In Proc Adaptive Learn Agents Workshop (ALA 2026) at AAMAS’26. May 2026.
Maccari ME, […], Huang C, […], Hertel J, Pearce EL, Ehl S, Klein Geltink RI, Rensing-Ehl A. FAS-controlled T cells drive lymphoproliferation through glycolysis without effector differentiation, J Human Immunity. May 2026.
Mallik N, Janowski M, Hog J, Rakotoarison H, Grabocka J, Hutter F, Klein A. When is Warmstarting Effective for Scaling Language Models?, arXiv. May 2026.
Vanhoefer J, Nakonecnij V, Binder N, Hasenauer J. Efficient Bayesian inference for ordinary differential equation models from experimental data with uncertain measurement times, bioRxiv. May 2026.
Blayer G, Kim MJ, Lefebvre F, Purucker L, Arazi A, Shapira E, Reichart R, Hutter F, Le Morvan M, Holzmüller D, Varoquaux G. STRABLE: Benchmarking Tabular Machine Learning with Strings, arXiv. May 2026.
Repple J, […], Schramm E, […], Reif A. Key challenges in advancing research on depression phenotyping, Nature Mental Health. May 2026.
Bellerino G, Rohde A. Before and beyond the mixing time: New approximations for additive functionals of stationary Gauss-Markov processes, arXiv. May 2026.
Klinger-König J, […], Hertel J, Grabe HJ. Linking combined oral contraceptive use to systemic immune marker profiles: the role of cortisol, Frontiers Endocrinology. May 2026.
Kabus F, Kordtomeikel K, Brox T, Wiendl H, Stolz D, Binder H. Eliciting associations between clinical variables from LLMs via comparison questions across populations, arXiv. May 2026.
Arazi A, […], Purucker L, Varoquaux G, Hutter F, Reichart R. MulTaBench: Benchmarking Multimodal Tabular Learning with Text and Image, arXiv. May 2026.
Brutsche J, Hahn S, Rohde A. Self-organized regime switching in null-recurrent dynamics, arXiv. Apr 2026.
Arruda J, […], Binder N, Opatowski L, Hasenauer J. Overcoming Selection Bias in Statistical Studies With Amortized Bayesian Inference, arXiv. Apr 2026.
Fässler D, […], Hertel J. Bilophila wadsworthia is linked to basal ganglia atrophy in the general population, Brain Behavior Immunity. Apr 2026.
Heinzel CS, Schweinsberg J. Estimating the Growth Rate of a Birth and Death Process Using data From a Small Sample, Bulletin Mathematical Biol. Apr 2026.
Samara M, Glarou E, Pinioti E, Nikolakopoulou A, Siafis S, Christodoulou N, Leucht S, Lappas AS. A systematic review and meta-analysis of clozapine response rates in schizophrenia, Nature Mental Health. Apr 2026.
Schoberth M, Böhm S, […], Hutter F, Westermann L, Köttgen A, Schlosser P, Köttgen M, Haug S. Transcriptome-based cell type assignment for kidney cell culture models, bioRxiv. Apr 2026.
Kabus F, Hindel J, Bratulić J, Karakioulaki M, Gupta A, Has C, Brox T, Valada A, Binder H. Assessing multimodal chronic wound embeddings with expert triplet agreement, arXiv. Mar 2026.
Watter M, […], Binder H, Kaier K. Accelerating metadata annotation in collaborative research centers: A hybrid AI workflow for biomedical entities, Mar 2026.
Zhu H, Hoffmann J, Zhang B, Boedecker J. Fitting Reinforcement Learning Model to Behavioral Data under Bandits, Frontiers Applied Mathematics Stat. Mar 2026.
Kapar J, Günther K, Vallis LA, Berger K, Binder N, […], Wright MN. Can synthetic data reproduce real-world findings in epidemiology? A replication study using adversarial random forests, arXiv. Mar 2026
Behrens M, Stolz D, Papakonstantinou E, Nolde JM, Bellerino G, Rohde A, Hess M, Binder H. Contrasting Global and Patient-Specific Regression Models via a Neural Network Representation, Biometrical J. Mar 2026.
Brunn N, […], Vogel T, Hackenberg M, Binder H. Mapping spatial cell-cell communication programs by tailoring chains of cells for transformer neural networks, bioRxiv. Mar 2026.
Koeksal R, Fritz A, Kumar A, Schmidts M, Tran VD, Backofen R. DisGeneFormer: Precise Disease Gene Prioritization by Integrating Local and Global Graph Attention, bioRxiv. Mar 2026.
Neubrand N, Rachel T, Litwin T, Timmer J, Kreutz C, Hess M. 1100 Synthetic Benchmark Problems for Dynamic Modeling of Cellular Processes, bioRxiv. Mar 2026.
Karakioulaki M, Yang H, Hess M, Binder H, Eyerich K, Has C. Systemic inflammation in recessive dystrophic epidermolysis bullosa: a five-year longitudinal study, Br. J. Dermatol. Mar 2026.
Brutsche J, Rohde A. The level of self-organized criticality in oscillating Brownian motion: 𝑛-consistency and stable Poisson-type convergence of the MLE, arXiv. Mar 2026.
Nematollahi I, […], Valada A, Cathomen T, Ullrich E, Kalweit M. BLINK: Behavioral Latent Modeling of NK Cell Cytotoxicity, arXiv. Mar 2026.
Kabus F, Hackenberg M, Hindel J, Cholvin T, Kilias A, Brox T, Valada A, Bartos M, Binder H. Embedding interpretable ℓ₁-regression into neural networks for uncovering temporal structure in cell imaging, arXiv. Mar 2026.
Farid K, Bratulić J, Mittal S, Schmid C, Brox T. Latent Imagination Thinking: Beyond Recursive Models for Reasoning, In ICLR 2026 Workshop World Models. Mar 2026.
Küken J, Hoo SB, Purucker L, Hutter F. TimEE: Towards End-to-end Time Series Classification via In-Context Learning, In ICLR 2026 Workshop Time Series Age Large Models. Mar 2026.
Franke JKH, Tennie IK, Uhl M, Koksal R, Matus D, Hutter F, Backofen R, Runge F. Synthetic RNA Evolution Enables Accurate Alignment-Free 3D Structure Prediction, In Generative Experimental perspectives bioMolecular design (GEM) workshop at ICLR. Mar 2026.
Ging S, Arnold P, Walter S, Alnahas H, Bast H, Kotter E, Yang J, Bozorgtabar B, Brox T. Learning to read where to look: Disease-aware vision-language pretraining for 3D CT, arXiv. Mar 2026.
Schneider-Thoma J, Zhu Y, Qin M, […], Nikolakopoulou A, Salanti G, Li C, Leucht S. Comparative efficacy and tolerability of antidopaminergic and muscarinic antipsychotics for acute schizophrenia: a network meta-analysis of randomised controlled trials indexed in international English and Chinese databases, Lancet. Feb 2026.
Habenicht H, Raum H, Boedecker J, Dormann CF. Evaluating Transferability and Robustness of Process-Guided Neural Networks in Forest Carbon Flux Modelling, bioRxiv. Feb 2026
Kwarteng N-A, Evrenoglou T, Müller J, Elsaesser M, Schramm E, Schwarzer G, Nikolakopoulou A. Illustrating the Assumptions of Meta-Regression in Treatment Networks, Research Square. Feb 2026
Evrenoglou T, Nikolakopoulou A, Schwarzer G, Rücker G, Chaimani A. Producing treatment hierarchies in network meta-analysis using probabilistic models and treatment-choice criteria, Res Synth Method. Feb 2026.
Rieck M, Mupepele A-C, Dormann CF. Authorship network bias in meta-analysis, Res Synth Method. Feb 2026
Farhadyar K, Hackenberg M, Ahrens K, […], Wolkewitz M, Hess M, Binder H. A statistical perspective on transformers for small longitudinal cohort data, arXiv. Feb 2026
Engel F, Giuliani C, Watter M, […], Binder H, Kaier K. From manual entry to machine precision: challenges and evolution of metadata schema development in collaborative research centers, Research Square. Feb 2026.
Staudt P, Schlosser A, Möhl A, Schumacher M, Binder N. Temporal Trends in Incidence of Dementia in a Birth Cohorts Analysis of the Framingham Heart Study, arXiv. Feb 2026.
Zabërgja G, Kamel R, Kadra A, Frey CMM, Grabocka J. End-to-End Compression for Tabular Foundation Models, arXiv. Feb 2026.
Schönthaler M, […], Behrens M, Binder H, Binder N. Challenges and solutions in determining urolithiasis caseloads using the digital infrastructure of a clinical data warehouse, PLoS One. Jan 2026.
Watter M, Giuliani C, Benadi G, Engel F, Binder H, Kaier K. Automated identification of contextually relevant biomedical entities with grounded LLMs, Sci Rep. Jan 2026.
Kaier K, Engel F, Benadi G, […], Binder H. Identification of biomedical entities from multiple repositories using a specialized metadata schema and search-augmented large language models, BMC Res Notes. Jan 2026.
Ging S, Walter S, Bratulić J, Dienert J, Bast H, Brox T. Using Knowledge Graphs to harvest datasets for efficient CLIP model training, In Pattern Recognition DAGM GCPR 2025 Lecture Notes Comput Sci. Jan 2026.
Hindel J, Mekic E, Enamundram NK, […], Kalweit M, Valada A. Dynamic Robot-Assisted Surgery with Hierarchical Class-Incremental Semantic Segmentation. In: Applications of Medical Artificial Intelligence 2025. Jan 2026.
Dormann CF, Käber Y, Hartig F. Full prediction uncertainty quantification: A plea from science and decision making. In Advances Ecological Research. Jan 2026.
2025 Walter S, Bast H. Knowledge Graph Entity Linking via Interactive Reasoning and Exploration with GRASP, In OM 2025 The 20th Int Workshop on Ontology Matching co-located with 24th Int Semantic Web Conf (ISWC 2025). Dec 2025.
Bratulić J, Mittal S, Brox T, Rupprecht C. On Geometric Understanding and Learned Data Priors in VGGT, arXiv. Dec 2025.
Haug S, Borisov O, Lehner N, […], Scherer N, […], Schlosser P, […], Köttgen A. Insights into Renal Protein Handling Through GWAS of the Human Urine Proteome, medRxiv. Dec 2025.
Yan S, Zhang B, Huang C, Boedecker J, Burgard W. Goal Achievement Guided Exploitation: A Principled Performance-Based Scheduling Framework for Reinforcement Learning, Trans on Machine Learn Res. Dec 2025.
Lange ZK, Farhadizadeh M, Dette H, Binder N. Testing similarity of competing risks models by comparing transition probabilities, arXiv. Nov 2025
Johannesen KM, Aung KP, Liao VWY, […], Schmidts M, […], Ahring PK . Functional consequence of pathogenic GABRA3 variants determines whether X-linked inheritance is dominant or recessive, J Clin Invest. Nov 2025
Schächter C, Hackenberg M, Treppner M, Raum H, Boedecker J, Binder H. scSpecies: enhancement of network architecture alignment in comparative single-cell studies, Genome Biol. Nov 2025
Kempf E, Schrodi S, Argus M, Brox T. When and How Does CLIP Enable Domain and Compositional Generalization? In: Proceedings of the 42nd International Conference on Machine Learning. Nov 2025
Raum H, Schnake T, Hellmann F, Kurths J, Nauck C. Explainable AI for analyzing the decision of GNNs at predicting dynamic stability of complex oscillator networks, Chaos. Nov 2025
Hermes J, Kim G-D, Liu G, […], Timmer J. A linear pathway for inositol pyrophosphate metabolism revealed by 18O labeling and model reduction, PLoS Comput Biol. Nov 2025
Swelam O, Purucker L, Robertson J, Raum H, Boedecker J, Hutter F. Does TabPFN Understand Causal Structures? arXiv. Nov 2025
Maurer T, Purucker L, Hutter F, Pfaffelhuber P, Heinzel CS. Enhancing Intra-Continental Biogeographical Ancestry Prediction Through a Machine Learning Marker Selection Method, bioRxiv. Nov 2025
Makarova KS, Shmakov SA, Wolf YI, […], Backofen R, van der Oost J, Barrangou R, Koonin EV. An updated evolutionary classification of CRISPR–Cas systems including rare variants, Nat Microbiol. Nov 2025
Schächter C, Hackenberg M, Pfaffenlehner M, Tambe-Ndonfack FB, Schmidt T, Pechmann A, Kirschner J, Hasenauer J, Binder H. Using latent representations to link disjoint longitudinal data for mixed-effects regression, arXiv. Nov 2025
Findik B, Dannenmann B, Bernhard F, Kaufmann MM, […], Cathomen T, Welte K, Nasri M, Skokowa J. Targeted Inhibition of ELANE Expression Using Adenine Base Editing to Treat Severe Congenital Neutropenia, Mol Ther Methods Clin Dev. Nov 2025
Pfefferle A, Hog J, Purucker L, Hutter F. nanoTabPFN: A Lightweight and Educational Reimplementation of TabPFN, arXiv. Nov 2025
Zhang B, Zhang Y, Zhu H, Yan S, Brox T, Boedecker J. Constrained Reinforcement Learning with Smoothed Log Barrier Function, Transact Mach Learn Res. Nov 2025
Walter S, Bast H. GRASP: Generic Reasoning And SPARQL Generation across Knowledge Graphs – Demo System, In Joint Proc Industry Doctoral Consortium Posters Demos 24th Int Semantic Web Conf (ISWC-C 2025). Nov 2025.
Erickson N, Purucker L, […], Hutter F. TabArena: A Living Benchmark for Machine Learning on Tabular Data, In Datasets Benchmarks Track. Oct 2025.
Walter S, Bast H. GRASP: Generic Reasoning And SPARQL Generation Across Knowledge Graphs. In: The Semantic Web – ISWC 2025. Oct 2025
Dobler D, Binder H, Boulesteix A-L, […], Weber S. ChatGPT as a Tool for Biostatisticians: A Tutorial on Applications, Opportunities, and Limitations, Stat Med. Oct 2025
Krishnakumar A, Sukthanker RS, Mahadik HJ, […] Hutter F, Klein A. Where to Begin: Efficient Pretraining via Subnetwork Selection and Distillation, arXiv. Oct 2025
Heinzel CS. Consistency and central limit results for the maximum likelihood estimator in the Admixture Model, Theor Popul Biol. Oct 2025
Kaier K, Benadi G, Nolde S, […], Binder H . Development and automated deployment of a specialised machine learning schema within a collaborative research centre: an explorative approach using large language models, medRxiv. Oct 2025
Schirrmeister RT, Ball T. New avenues for understanding what deep networks learn from EEG, Front Robot AI. Oct 2025
Hackenberg M, Pechmann A, Kreutz C, Kirschner J, Binder H. A Statistical Approach to Latent Dynamic Modeling with Differential Equations, Am Stat. Sept 2025
Argus M, Bratulić J, Masnavi H, Velikanov M, Neppert N, Valada A, Brox T. cVLA: Towards Efficient Camera-Space VLAs. In: Workshop on Generalizable Priors for Robot Manipulation, CoRL. Sept 2025
Brunn N, Hackenberg M, Fullio CL, Vogel T, Binder H. Sparse dimensionality reduction for analyzing single-cell-resolved interactions, Bioinformatics. Sept 2025
Heinzel CS, Jadebeck JF, Zelle E, Seiffarth J, Nöh K. Combining Knowledge About Metabolic Networks and Single-Cell Data with Maximum Entropy, Phys Sci Forum. Sept 2025
Karakioulaki M, Kwarteng N-A, Nikolakopoulou A, Yang H, Hess M, Binder H, Eyerich K, Has C. Tissue and systemic inflammation in dystrophic epidermolysis bullosa: a systematic review and meta-analysis, Orphanet J Rare Dis. Sept 2025
Azcona MSR, Monaco G, Whitehead M, Kaufmann MM, Alzubi J, Cathomen T, Mussolino C. Sustained and specific multiplexed immune checkpoint modulation in CAR T cells induced by targeted epigenome editing, Mol Ther Nucleic Acids. Sept 2025
Kalter N, Fuster-García C, Silva A, […], Cathomen T, […], Hendel A. Off-target effects in CRISPR-Cas genome editing for human therapeutics: Progress and challenges, Mol Ther Nucleic Acids. Sept 2025
Dette H, Koletzko L, Bretz F. Testing for Similarity of Dose Response in Multiregional Clinical Trials, Stat Med. Sept 2025
Heiss J, Krach F, Schmidt T, Tambe-Ndonfack FB. Nonparametric filtering, estimation and classification using neural jump ODEs, Statis Risk Model. Sept 2025
Mohan R, Hindel J, Drews F, Gläser C, Cattaneo D, Valada A. Open-Set LiDAR Panoptic Segmentation Guided by Uncertainty-Aware Learning, In IEEE/RSJ Int Conf on Intelligent Robots Syst (IROS). Sep 2025.
Heinzel CS, Purucker L, Hutter F, Pfaffelhuber P. Advancing biogeographical ancestry predictions through machine learning, Forensic Sci. Int. Genet. Sept 2025.
Franck M, Daunizeau C, Aronoff JE, […], Hertel J, […], Cohen AA. Inflamm-aging as a diverse and context-dependent process: from species and population differences to individual trajectories, Ageing Res Rev. Aug 2025
Krißmer SM, Menger J, Rollin J, Vogel T, Binder H, Hackenberg M. Adding layers of information to scRNA-seq data using pre-trained language models, bioRxiv. Aug 2025
Das B, Purucker L, Carstensen T, Hutter F. Quickly Tuning Foundation Models for Image Segmentation, arXiv. Aug 2025
Ziemann M, Mitrofanov A, Stöckl R, Alkhnbashi OS, Backofen R, Hess WR. Analysis of tracrRNAs reveals subgroup V2 of type V-K CAST systems, microLife. Aug 2025.
Schäfer B, Purucker L, Janowski M, Hutter F. How Usable is Automated Feature Engineering for Tabular Data?, arXiv. Aug 2025
Gurung B, Hoffmann DT, Brox T. Common Data Properties Limit Object-Attribute Binding in CLIP, arXiv. Aug 2025
Frosch M, Shimizu T, Wogram E, […], Binder H, […], Prinz M. Microglia–neuron crosstalk through Hex–GM2–MGL2 maintains brain homeostasis, Nature. Aug 2025
Klier K, Mehrjerd A, Fässler D, […], Hertel J. Integrating population-based metabolomics with computational microbiome modelling identifies methanol as a urinary biomarker for protective diet-microbiome-host interactions, Food Funct. Aug 2025
Bartsch S, Kreutz C, Scholz KJ, Kohnert E, Hertel J, […], Cieplik F. Culturomics: Deciphering the Microbial Dark Matter in the Oral Cavity, J Dent Res. July 2025
Hackenberg M, Connor SG, Kabus F, […], Backofen R, Köttgen A, Rohde A, Binder N, Binder H, the Collaborative Research Center 1597 SmallData. Small Data Explainer — The impact of small data methods in everyday life, arXiv. Jul 2025
Bischl B, Casalicchio G, Das T, […], Purucker L, […], Wever M. OpenML: Insights from 10 years and more than a thousand papers, Patterns. July 2025
Mráz M, Das B, Gupta A, Purucker L, Hutter F. Towards Benchmarking Foundation Models for Tabular Data With Text. In: Foundation Models for Structured Data workshop, ICML 2025. July 2025
Feuer B, Purucker L, Elachqar O, Hegde C. MARVIS: Modality Adaptive Reasoning over VISualizations, arXiv. July 2025
Franck M, Tanner KT, Tennyson RL, […] Hertel J, […], Cohen AA. Nonuniversality of inflammaging across human populations, Nat Aging. Jun 2025.
Hackenberg M, Canal Guitart L, Backofen R, Binder H. Evaluating discrepancies in dimensionality reduction for time-series single-cell RNA-sequencing data, Brief Bioinform. June 2025
Tahmasebi NR, Davies AL, Papakonstantinou T, Rücker G, Nikolakopoulou A. Path-Based Approach for Detecting and Assessing Inconsistency in Network Meta-Analysis: A Novel Method, arXiv. June 2025
Pineda Arango S, Janowski M, Purucker L, Zela A, Hutter F, Grabocka J. Regularized Neural Ensemblers, arXiv. June 2025
Wigle A, Béliveau A, Salanti G, […], Nikolakopoulou A. Precision of Treatment Hierarchy: A Metric for Quantifying Certainty in Treatment Hierarchies From Network Meta-Analysis, Stat Med. June 2025
Heinzel CS, Baumdicker F, Pfaffelhuber P. Revealing the range of equally likely estimates in the admixture model, G3 Genes|Genomes|Genetics. Jun 2025.
Fleckhaus J, Anslinger K, Lutz-Bonengel S, Vennemann M, Diepenbroek M. Aktueller Stand der „erweiterten DNA-Analyse“, Rechtsmedizin. Jun 2025
Herrmann A, Kuhn A, Hackenberg M, […], Janzarik WG. Diagnostic clues and pitfalls in pontocerebellar hypoplasia type 2A, medRxiv. June 2025
Garg A, Ali M, Hollmann N, Purucker L, Müller S, Hutter F. Real-TabPFN: Improving Tabular Foundation Models via Continued Pre-training With Real-World Data, Workshop on Foundation Models for Structured Data at ICML 2025. June 2025
Bühler M, Purucker L, Hutter F. Towards Synthetic Data for Fine-tuning Tabular Foundation Models, Workshop on Foundation Models for Structured Data at ICML 2025. June 2025
Schrodi S, Schur J, Argus M, Brox T. Selective Concept Bottleneck Models Without Predefined Concepts, Trans on Machine Learn Res. Jun 2025.
Cong T, […], Purucker L, […], Hutter F. Position: Unlocking the Full Potential of Data Science Requires Tabular Foundation Models, Agents, and Humans, May 2025.
Farhadizadeh M, Weymann M, Blaß M, […], Binder H, Binder N. A systematic review of challenges and proposed solutions in modeling multimodal data, arXiv. May 2025
Berns H, Weber D, Haas M, […], Schmidts M, Walentek P. A homozygous human WNT11 variant is associated with laterality, heart and renal defects, Dis Model Mech. May 2025
Schrodi S, Hoffmann DT, Argus M, Fischer V, Brox T. Two Effects, One Trigger: On the Modality Gap, Object Bias, and Information Imbalance in Contrastive Vision-Language Models, In Int Conf on Learn Representations. May 2025.
Sommer L, Dünkel O, Theobalt C, Kortylewski A. Common3D: Self-Supervised Learning of 3D Morphable Models for Common Objects in Neural Feature Space, In Proc IEEE/CVF Conf on Comput Vision Pattern Recognition (CVPR). Jun 2025.
Karahalios A, White IR, Turner SL, […], Nikolakopoulou A, McKenzie JE. An investigation of the impact of using contrast- and arm-synthesis models for network meta-analysis, Res Synth Methods. Apr 2025
Tschalzev A, Purucker L, Lüdtke S, Hutter F, Bartelt C, Stuckenschmidt H. Unreflected Use of Tabular Data Repositories Can Undermine Research Quality, MLDPR at ICML 2025. Apr 2025.
Naouar M, Raum H, Rahnfeld J, Vogt Y, Boedecker J, Kalweit G, Kalweit M. SALVAGE: Shapley-distribution approximation learning via attribution guided exploration for explainable image classification, ICLR 2025. Apr 2025.
König L, Schmidts M. Chapter Seven – The role of chromatin-related epigenetic modulations in CAKUT, Curr Top Dev Biol 2025:163:169-227. Apr 2025.
Pretzel, Herrmann, Kuhn A, […], Hackenberg M, […], Janzarik WG. Brain morphometry and psychomotor development in children with PCH2A, Eur J Paediatr Neurol. Apr 2025
Arnold PG, Russe MF, Bamberg F, […], Kotter E, Hagar MT. Performance of large language models for CAD-RADS 2.0 classification derived from cardiac CT reports, J Cardiovasc Comput Tomogr. Apr 2025
Roman Azcona MS, Cathomen T, Mussolino C. From CRISPR screens to circuits: identifying key regulators in T cell activation and state transitions, Sig Transduct Target Ther. Apr 2025
Hecht M, Blümle A, Binder H, Schumacher M, Binder N. Investigator-initiated versus industry-sponsored trials – visibility and relevance of randomized controlled trials in clinical practice guidelines (IMPACT), BMC Med Res Methodol. Mar 2025.
Hog J, Rajan R, Biedenkapp A, Awad N, Hutter F, Nguyen V. Meta-learning Population-based Methods for Reinforcement Learning, Transact Mach Learn Res. Mar 2025.
Hackenberg M, Brunn N, Vogel T, Binder H. Infusing structural assumptions into dimensionality reduction for single-cell RNA sequencing data to identify small gene sets, Commun Biol. Mar 2025.
Curteis T, Wigle A, Michaels CJ, Nikolakopoulou A. Ranking of treatments in network meta-analysis: incorporating minimally important differences, BMC Med Res Methodol. Mar 2025
Fässler D, Heinken A, Hertel J. Characterising functional redundancy in microbiome communities via relative entropy, Comput Struct Biotechnol J. Mar 2025
Hindel J, Mohan R, Bratulic J, Cattaneo D, Brox T, Valada A. Label-Efficient LiDAR Semantic Segmentation with 2D-3D Vision Transformer Adapters, arxiv. Mar 2025.
Giuliani C, Benadi G, Engel F, […], Binder H, Kaier K. Identifying biomedical entities for datasets in scientific articles – A 4-step cache-augmented generation approach using GPT-4o and PubTator 3.0, medRxiv. Mar 2025.
Schramm E, Elsaesser M, Müller J, Kwarteng NA, [..], Nikolakopoulou A. Efficacy of psychotherapy versus pharmacotherapy, or their combination, in chronic depression: study protocol for a systematic review and network meta-analysis using aggregated and individual patient data, BMJ Open. Feb 2025.
Stadelmaier J, […], Nikolakopoulou A, Schwingshackl L. Evaluating agreement between individual nutrition randomised controlled trials and cohort studies-a meta-epidemiological study, BMC medicine. Jan 2025.
Pfaffenlehner M, Behrens M, Zoeller D, […], Scherag A, Binder H, Binder N for the EVA4MII project. Methodological challenges using routine clinical care data for real-world evidence: a rapid review utilizing a systematic literature search and focus group discussion, BMC Med Res Methodol. Jan 2025.
Siemens W, Elm E von, Binder H, […], Meerpohl J. Opportunities, challenges and risks of using artificial intelligence for evidence synthesis, BMJ Evid Based Med. Jan 2025
Hollmann N, Müller S, Purucker L, […], Hutter F. Accurate predictions on small data with a tabular foundation model, Nature. Jan 2025
Scherer N, Fässler D, Borisov O, Cheng Y, Schlosser P, […], Schmidts M, […], Hertel J, Köttgen A. Coupling metabolomics and exome sequencing reveals graded effects of rare damaging heterozygous variants on gene function and human traits, Nature Genet. Jan 2025.
2024 Hindel J, Cattaneo D, Valada A. Taxonomy-Aware Continual Semantic Segmentation in Hyperbolic Spaces for Open-World Perception, IEEE Robot Autom Lett. Dec 2024
Ma J, Li F, Kim S, […], Purucker L, […], Wang B. Efficient MedSAMs: Segment Anything in Medical Images on Laptop, arXiv. Dec 2024
Sukthanker RS, […], Purucker L, Franke JK, Hutter F. HW-GPT-Bench: Hardware-Aware Architecture Benchmark for Language Models. In NeurIPS 2024: Track Datasets and Benchmarks Poster. Dec 2024.
Mallik N, Janowski M, Hog J, Rakotoarison H, Klein A, Grabocka J, Hutter F. Warmstarting for Scaling Language Models. In NeurIPS 2024: Workshop on Adaptive Foundation Models. Dec 2024.
Fichtner UA, Knaus J, Graf E, […], Binder H, Weber S. Exploring the potential of large language models for integration into an academic statistical consulting service–the EXPOLS study protocol, PLoS One. Dec 2024.
Wesselkamp M, Moser N, Kalweit M, Boedecker J, Dormann CF. Process-Informed Neural Networks: A Hybrid Modelling Approach to Improve Predictive Performance and Inference of Neural Networks in Ecology and Beyond, Ecol Lett. Dec 2024.
Matus D, Runge F, Franke JKH, […], Hutter F, Backofen R. RNA-Protein Interaction Classification via Sequence Embeddings, bioRxiv. Nov 2024
Arango SP, Janowski M, Purucker L, Zela A, Hutter F, Grabocka J. Ensembling Finetuned Language Models for Text Classification, arXiv. Oct 2024.
Strangmann T, Purucker L, Franke JK, Rapant I, Ferreira F, Hutter F. Transfer Learning for Finetuning Large Language Models, arXiv. Nov 2024.
Robertson J, Schmidt T, Hutter F, Awad N. A Human-in-the-Loop Fairness-Aware Model Selection Framework for Complex Fairness Objective Landscapes, arXiv. Oct 2024.
Möllenhoff K, Binder N, Dette H. Testing Similarity of Parametric Competing Risks Models for Identifying Potentially Similar Pathways in Healthcare, Stat. Med. Oct 2024.
Küken J, Purucker L, Hutter F. Large Language Models Engineer Too Many Simple Features for Tabular Data. InNeurIPS 2024: Third Table Representation Learning Workshop. Oct 2024.
Zhang B, Frison L, Brox T, Bödecker J. Constrained Reinforcement Learning for Safe Heat Pump Control, arXiv. Sep 2024.
Runge F, Hutter F. Machine Learning for RNA Design: LEARNA. In RNA Design: Methods and Protocols (pp. 63-93). Sep 2024.
Marquart KF, […], Kaufmann MM, Matsushita M, Haenggi T, Cathomen T, […], Schwank G. Effective genome editing with an enhanced ISDra2 TnpB system and deep learning-predicted ωRNAs, Nature Methods. Sep 2024.
Farhadyar K, Bonofiglio F, Hackenberg M, Zoeller D, Binder H. Combining propensity score methods with variational autoencoders for generating synthetic data in presence of latent sub-groups, BMC Med. Res. Methodol. Sept 2024
Rapant I, Purucker L, Ferreira F, Arango SP, Kadra A, Grabocka J, Hutter F. Quick-Tune-Tool: A Practical Tool and its User Guide for Automatically Finetuning Pretrained Models. In AutoML 2024: Workshop Track. Sept 2024
Schmidts M, Qader MA. The Many Faces of Congenital Anomalies of the Kidney and Urinary Tract. In Kidney International Reports; Volume 9, Issue 9 (pp. 2594-2595). Sep 2024.
Schaechter C, Treppner M, Hackenberg M, Raum H, Boedecker J, Binder H. Enhancement of network architecture alignment in comparative single-cell studies, bioRxiv. Aug 2024.
Iruzubieta P, Alves CA, Al Shamsi AM, […], Schmidts M, […], Maroofian R. Clinical and neuroradiological spectrum of biallelic variants in NOTCH3, EBioMedicine. Aug 2024.
Jobson Pargeter W, Backofen R, Tran VD. CRISPert: A Transformer-Based Model for CRISPR-Cas Off-Target Prediction. In ECML 2024: Machine Learning and Knowledge Discovery in Databases, Research Track. Aug 2024.
Bergman E, […], Purucker L, Segel S, Lindauer M, Hutter F, Eggensperger K. AMLTK: A Modular AutoML Toolkit in Python, JOSS. Aug 2024.
Patil S, Schirrmeister RT, Hutter F, Ball T. CoordConformer: Heterogenous EEG datasets decoding using Transformers. In ICML 2024: Workshop on Geometry-grounded Representation Learning and Generative Modeling. Jul 2024
Hoffmann DT, Schrodi S, Bratulić J, Behrmann N, Fischer V, Brox T. Eureka-Moments in Transformers: Multi-Step Tasks Reveal Softmax Induced Optimization Problems. In ICML 2024: Proceedings of Machine Learning Research. Jul 2024
Bordne P, Hasan MA, Bergman E, Awad N, Biedenkapp A. CANDID DAC: Leveraging Coupled Action Dimensions with Importance Differences in DAC, arXiv. Jul 2024.
Maier J, Möller F, Purucker L. Hardware Aware Ensemble Selection for Balancing Predictive Accuracy and Cost, In Workshop Track. Jul 2024.
Pfefferle AT, Purucker L, Hutter F. DAFT: Data-Aware Fine-Tuning of Foundation Models for Efficient and Effective Medical Image Segmentation. In CVPR 2024: Segment Anything In Medical Images On Laptop. Jun 2024
Brutsche J, Rohde A. Sharp adaptive and pathwise stable similarity testing for scalar ergodic diffusions, Ann. Stat. Jun 2024
Behrens M, Farhadizadeh M, Rohde A, Rühle A, Nicolay NH, Binder H, Zöller D. Improving prediction models by incorporating external data with weights based on similarity, arXiv. May 2024.
Bergman E, Purucker L, Hutter F. Don’t Waste Your Time: Early Stopping Cross-Validation, arXiv. May 2024.
Reimer‐Taschenbrecker A, Hess M, […], Has C. IL‐6 levels dominate the serum cytokine signature of severe epidermolysis bullosa: A prospective cohort study, J Eur Acad Dermatol Venereol. Feb 2024.
Franke JK, Runge F, Koeksal R, Backofen R, Hutter F. RNAformer: A Simple Yet Effective Deep Learning Model for RNA Secondary Structure Prediction, bioRxiv. Feb 2024.
Ging S, Bravo MA, Brox T. Open-ended VQA benchmarking of vision-language models by exploiting classification datasets and their semantic hierarchy, In ICLR 2024 Spotlight. Jan 2024.
2023 Hackenberg M, Pfaffenlehner M, Behrens M, Pechmann A, Kirschner J, Binder H. Investigating a Domain Adaptation Approach for Integrating Different Measurement Instruments in a Longitudinal Clinical Registry, Biom J. Dec 2023.
