Lei L, Kaufmann MM, […], Cathomen T. Genotoxicity profiling reveals distinct platform-and cell type-specific effects in therapeutic gene editing for genetic hyperinflammation, Cell Stem Cell. Jun 2026.

Schmidt T, Tambe-Ndonfack FTN. Nonlinear filtering with stochastic discontinuities, arXiv. May 2026.

Arruda J, […], Binder N, Opatowski L, Hasenauer J. Overcoming Selection Bias in Statistical Studies With Amortized
Bayesian Inference, arXiv. Apr 2026.

Fässler D, […], Hertel J. Bilophila wadsworthia is linked to basal ganglia atrophy in the general population, Brain Behavior Immunity. Apr 2026.

Kapar J, Günther K, Vallis LA, Berger K, Binder N, […], Wright MN. Can synthetic data reproduce real-world findings in epidemiology? A replication study using adversarial random forests, arXiv. Mar 2026

Ging S, Arnold P, Walter S, Alnahas H, Bast H, Kotter E, Yang J, Bozorgtabar B, Brox T. Learning to read where to look: Disease-aware vision-language pretraining for 3D CT, arXiv. Mar 2026.

Ging S, Walter S, Bratulić J, Dienert J, Bast H, Brox T. Using Knowledge Graphs to harvest datasets for efficient CLIP model training, In Pattern Recognition DAGM GCPR 2025 Lecture Notes Comput Sci. Jan 2026.

Hackenberg M, Pechmann A, Kreutz C, Kirschner J, Binder H. A Statistical Approach to Latent Dynamic Modeling with Differential Equations, Am Stat. Sept 2025

Heiss J, Krach F, Schmidt T, Tambe-Ndonfack FB. Nonparametric filtering, estimation and classification using neural jump ODEs, Statis Risk Model. Sept 2025

Heinzel CS, Purucker L, Hutter F, Pfaffelhuber P. Advancing biogeographical ancestry predictions through machine learning, Forensic Sci. Int. Genet. Sept 2025.

Ziemann M, Mitrofanov A, Stöckl R, Alkhnbashi OS, Backofen R, Hess WR. Analysis of tracrRNAs reveals subgroup V2 of type V-K CAST systems, microLife. Aug 2025.

Wigle A, Béliveau A, Salanti G, […], Nikolakopoulou A. Precision of Treatment Hierarchy: A Metric for Quantifying Certainty in Treatment Hierarchies From Network Meta-Analysis, Stat Med. June 2025

Heinzel CS, Baumdicker F, Pfaffelhuber P. Revealing the range of equally likely estimates in the admixture model, G3 Genes|Genomes|Genetics. Jun 2025.

Farhadizadeh M, Weymann M, Blaß M, […], Binder H, Binder N. A systematic review of challenges and proposed solutions in modeling multimodal data, arXiv. May 2025

Berns H, Weber D, Haas M, […], Schmidts M, Walentek P. A homozygous human WNT11 variant is associated with laterality, heart and renal defects, Dis Model Mech. May 2025

Sommer L, Dünkel O, Theobalt C, Kortylewski A. Common3D: Self-Supervised Learning of 3D Morphable Models for Common Objects in Neural Feature Space, In Proc IEEE/CVF Conf on Comput Vision Pattern Recognition (CVPR). Jun 2025.

Karahalios A, White IR, Turner SL, […], Nikolakopoulou A, McKenzie JE. An investigation of the impact of using contrast- and arm-synthesis models for network meta-analysis, Res Synth Methods. Apr 2025

Tschalzev A, Purucker L, Lüdtke S, Hutter F, Bartelt C, Stuckenschmidt H. Unreflected Use of Tabular Data Repositories Can Undermine Research Quality, MLDPR at ICML 2025. Apr 2025.

Naouar M, Raum H, Rahnfeld J, Vogt Y, Boedecker J, Kalweit G, Kalweit M. SALVAGE: Shapley-distribution approximation learning via attribution guided exploration for explainable image classification, ICLR 2025. Apr 2025.

König L, Schmidts M. Chapter Seven – The role of chromatin-related epigenetic modulations in CAKUT, Curr Top Dev Biol 2025:163:169-227. Apr 2025.

Pretzel, Herrmann, Kuhn A, […], Hackenberg M, […], Janzarik WG. Brain morphometry and psychomotor development in children with PCH2A, Eur J Paediatr Neurol. Apr 2025

Arnold PG, Russe MF, Bamberg F, […], Kotter E, Hagar MT. Performance of large language models for CAD-RADS 2.0 classification derived from cardiac CT reports, J Cardiovasc Comput Tomogr. Apr 2025

Roman Azcona MS, Cathomen T, Mussolino C. From CRISPR screens to circuits: identifying key regulators in T cell activation and state transitions, Sig Transduct Target Ther. Apr 2025

Hecht M, Blümle A, Binder H, Schumacher M, Binder N. Investigator-initiated versus industry-sponsored trials – visibility and relevance of randomized controlled trials in clinical practice guidelines (IMPACT), BMC Med Res Methodol. Mar 2025.

Hog J, Rajan R, Biedenkapp A, Awad N, Hutter F, Nguyen V. Meta-learning Population-based Methods for Reinforcement Learning, Transact Mach Learn Res. Mar 2025.

Hackenberg M, Brunn N, Vogel T, Binder H. Infusing structural assumptions into dimensionality reduction for single-cell RNA sequencing data to identify small gene sets, Commun Biol. Mar 2025.

Curteis T, Wigle A, Michaels CJ, Nikolakopoulou A. Ranking of treatments in network meta-analysis: incorporating minimally important differences, BMC Med Res Methodol. Mar 2025

Fässler D, Heinken A, Hertel J. Characterising functional redundancy in microbiome communities via relative entropy, Comput Struct Biotechnol J. Mar 2025

Hindel J, Mohan R, Bratulic J, Cattaneo D, Brox T, Valada A. Label-Efficient LiDAR Semantic Segmentation with 2D-3D Vision Transformer Adapters, arxiv. Mar 2025.

Giuliani C, Benadi G, Engel F, […], Binder H, Kaier K. Identifying biomedical entities for datasets in scientific articles – A 4-step cache-augmented generation approach using GPT-4o and PubTator 3.0, medRxiv. Mar 2025.

Schramm E, Elsaesser M, Müller J, Kwarteng NA, [..], Nikolakopoulou A. Efficacy of psychotherapy versus pharmacotherapy, or their combination, in chronic depression: study protocol for a systematic review and network meta-analysis using aggregated and individual patient data, BMJ Open. Feb 2025.

Stadelmaier J, […], Nikolakopoulou A, Schwingshackl L. Evaluating agreement between individual nutrition randomised controlled trials and cohort studies-a meta-epidemiological study, BMC medicine. Jan 2025.

Pfaffenlehner M, Behrens M, Zoeller D, […], Scherag A, Binder H, Binder N for the EVA4MII project. Methodological challenges using routine clinical care data for real-world evidence: a rapid review utilizing a systematic literature search and focus group discussion, BMC Med Res Methodol. Jan 2025.

Siemens W, Elm E von, Binder H, […], Meerpohl J. Opportunities, challenges and risks of using artificial intelligence for evidence synthesis, BMJ Evid Based Med. Jan 2025

Hollmann N, Müller S, Purucker L, […], Hutter F. Accurate predictions on small data with a tabular foundation model, Nature. Jan 2025

Scherer N, Fässler D, Borisov O, Cheng Y, Schlosser P, […], Schmidts M, […], Hertel J, Köttgen A. Coupling metabolomics and exome sequencing reveals graded effects of rare damaging heterozygous variants on gene function and human traits, Nature Genet. Jan 2025.

Hindel J, Cattaneo D, Valada A. Taxonomy-Aware Continual Semantic Segmentation in Hyperbolic Spaces for Open-World Perception, IEEE Robot Autom Lett. Dec 2024

Ma J, Li F, Kim S, […], Purucker L, […], Wang B. Efficient MedSAMs: Segment Anything in Medical Images on Laptop, arXiv. Dec 2024

Sukthanker RS, […], Purucker L, Franke JK, Hutter F. HW-GPT-Bench: Hardware-Aware Architecture Benchmark for Language Models. In NeurIPS 2024: Track Datasets and Benchmarks Poster. Dec 2024.

Mallik N, Janowski M, Hog J, Rakotoarison H, Klein A, Grabocka J, Hutter F. Warmstarting for Scaling Language Models. In NeurIPS 2024: Workshop on Adaptive Foundation Models. Dec 2024.

Fichtner UA, Knaus J, Graf E, […], Binder H, Weber S. Exploring the potential of large language models for integration into an academic statistical consulting service–the EXPOLS study protocol, PLoS One. Dec 2024.

Wesselkamp M, Moser N, Kalweit M, Boedecker J, Dormann CF. Process-Informed Neural Networks: A Hybrid Modelling Approach to Improve Predictive Performance and Inference of Neural Networks in Ecology and Beyond, Ecol Lett. Dec 2024.

Arango SP, Janowski M, Purucker L, Zela A, Hutter F, Grabocka J. Ensembling Finetuned Language Models for Text Classification, arXiv. Oct 2024.

Strangmann T, Purucker L, Franke JK, Rapant I, Ferreira F, Hutter F. Transfer Learning for Finetuning Large Language Models, arXiv. Nov 2024.

Robertson J, Schmidt T, Hutter F, Awad N. A Human-in-the-Loop Fairness-Aware Model Selection Framework for Complex Fairness Objective Landscapes, arXiv. Oct 2024.

Möllenhoff K, Binder N, Dette H. Testing Similarity of Parametric Competing Risks Models for Identifying Potentially Similar Pathways in Healthcare, Stat. Med. Oct 2024.

Küken J, Purucker L, Hutter F. Large Language Models Engineer Too Many Simple Features for Tabular Data. InNeurIPS 2024: Third Table Representation Learning Workshop. Oct 2024.

Runge F, Hutter F. Machine Learning for RNA Design: LEARNA. In RNA Design: Methods and Protocols (pp. 63-93). Sep 2024.

Marquart KF, […], Kaufmann MM, Matsushita M, Haenggi T, Cathomen T, […], Schwank G. Effective genome editing with an enhanced ISDra2 TnpB system and deep learning-predicted ωRNAs, Nature Methods. Sep 2024.

Farhadyar K, Bonofiglio F, Hackenberg M, Zoeller D, Binder H. Combining propensity score methods with variational autoencoders for generating synthetic data in presence of latent sub-groups, BMC Med. Res. Methodol. Sept 2024

Rapant I, Purucker L, Ferreira F, Arango SP, Kadra A, Grabocka J, Hutter F. Quick-Tune-Tool: A Practical Tool and its User Guide for Automatically Finetuning Pretrained Models. In AutoML 2024: Workshop Track. Sept 2024

Schmidts M, Qader MA. The Many Faces of Congenital Anomalies of the Kidney and Urinary Tract. In Kidney International Reports; Volume 9, Issue 9 (pp. 2594-2595). Sep 2024.

Schaechter C, Treppner M, Hackenberg M, Raum H, Boedecker J, Binder H. Enhancement of network architecture alignment in comparative single-cell studies, bioRxiv. Aug 2024.

Iruzubieta P, Alves CA, Al Shamsi AM, […], Schmidts M, […], Maroofian R. Clinical and neuroradiological spectrum of biallelic variants in NOTCH3, EBioMedicine. Aug 2024.

Jobson Pargeter W, Backofen R, Tran VD. CRISPert: A Transformer-Based Model for CRISPR-Cas Off-Target Prediction. In ECML 2024: Machine Learning and Knowledge Discovery in Databases, Research Track. Aug 2024.

Bergman E, […], Purucker L, Segel S, Lindauer M, Hutter F, Eggensperger K. AMLTK: A Modular AutoML Toolkit in Python, JOSS. Aug 2024.

Patil S, Schirrmeister RT, Hutter F, Ball T. CoordConformer: Heterogenous EEG datasets decoding using Transformers. In ICML 2024: Workshop on Geometry-grounded Representation Learning and Generative Modeling. Jul 2024

Hoffmann DT, Schrodi S, Bratulić J, Behrmann N, Fischer V, Brox T. Eureka-Moments in Transformers: Multi-Step Tasks Reveal Softmax Induced Optimization Problems. In ICML 2024: Proceedings of Machine Learning Research. Jul 2024

Bordne P, Hasan MA, Bergman E, Awad N, Biedenkapp A. CANDID DAC: Leveraging Coupled Action Dimensions with Importance Differences in DAC, arXiv. Jul 2024.

Maier J, Möller F, Purucker L. Hardware Aware Ensemble Selection for Balancing Predictive Accuracy and Cost, In Workshop Track. Jul 2024.

Pfefferle AT, Purucker L, Hutter F. DAFT: Data-Aware Fine-Tuning of Foundation Models for Efficient and Effective Medical Image Segmentation. In CVPR 2024: Segment Anything In Medical Images On Laptop. Jun 2024

Brutsche J, Rohde A. Sharp adaptive and pathwise stable similarity testing for scalar ergodic diffusions, Ann. Stat. Jun 2024

Behrens M, Farhadizadeh M, Rohde A, Rühle A, Nicolay NH, Binder H, Zöller D. Improving prediction models by incorporating external data with weights based on similarity, arXiv. May 2024.

Bergman E, Purucker L, Hutter F. Don’t Waste Your Time: Early Stopping Cross-Validation, arXiv. May 2024.

Reimer‐Taschenbrecker A, Hess M, […], Has C. IL‐6 levels dominate the serum cytokine signature of severe epidermolysis bullosa: A prospective cohort study, J Eur Acad Dermatol Venereol. Feb 2024.

Franke JK, Runge F, Koeksal R, Backofen R, Hutter F. RNAformer: A Simple Yet Effective Deep Learning Model for RNA Secondary Structure Prediction, bioRxiv. Feb 2024.

Ging S, Bravo MA, Brox T. Open-ended VQA benchmarking of vision-language models by exploiting classification datasets and their semantic hierarchy, In ICLR 2024 Spotlight. Jan 2024.

Hackenberg M, Pfaffenlehner M, Behrens M, Pechmann A, Kirschner J, Binder H. Investigating a Domain Adaptation Approach for Integrating Different Measurement Instruments in a Longitudinal Clinical Registry, Biom J. Dec 2023.