SmallData Symposium 2024

Prof. Dr. 

Tanja Vogel

Institute for Anatomy and Cell Biology, University of Freiburg

Publications

Brunn N, Hackenberg M, Fullio CL, Vogel T, Binder H. Sparse dimensionality reduction for analyzing single-cell-resolved interactions, Bioinformatics Advances. Sep 2025
Krißmer SM, Menger J, Rollin J, Vogel T, Binder H, Hackenberg M. Adding layers of information to scRNA-seq data using pre-trained language models, bioRxiv. Aug 2025
Hackenberg M, Brunn N, Vogel T, Binder H. Infusing structural assumptions into dimensionality reduction for single-cell RNA sequencing data to identify small gene sets, Communications Biology. Mar 2025

Related Resources in the Small Data Companion

Binder H, et al. (2025) Sparse dimensionality reduction for analyzing single-cell-resolved interactions
Model, algorithm or code
Binder H, et al. (2025) Single-Cell ALRA-imputed Rat Lung Data
Dataset
Binder H, et al. (2025) Sparse dimensionality reduction for analyzing single-cell-resolved interactions
Original Preprint
Binder H, et al. (2025) BoostingAutoencoder
Model, algorithm or code
Binder H, et al. (2025) Tasic data: dataset of adult mouse cortical cells
Dataset
Binder H, et al. (2025) Embryoid Body data for PHATE
Dataset
Binder H, et al. (2025) Infusing structural assumptions into dimension reduction for single-cell RNA sequencing data to identify small gene sets
Original Preprint
Binder H, et al. (2025) Human Immune Health Atlas: dataset
Dataset
Binder H, et al. (2025) Developing mouse brain dataset (LaManno et al. 2016)
Dataset
Binder H, et al. (2025) Python package "alias"
Model, algorithm or code

Administrative Manager

Marc Schumacher

Institute of Medical Biometry and Statistics,
Faculty of Medicine and Medical Center –
University of Freiburg